List of all published articles µ-VIS has been involved in and our filters managed to capture.
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Joyce, Rachael
Investigation into micron-scale needle penetration using finite element analysis with experimental validation Proceedings Article
In: Cardiff University, School of Engineering Research Conference 2023, 12 -14 Jul 2023, 2023.
@inproceedings{RachaelJoyce2023,
title = {Investigation into micron-scale needle penetration using finite element analysis with experimental validation},
author = {Rachael Joyce},
url = {https://www.eventbrite.com/e/cardiff-university-school-of-engineering-research-conference-2023-registration-491320451697},
year = {2023},
date = {2023-07-01},
booktitle = {Cardiff University, School of Engineering Research Conference 2023, 12 -14 Jul 2023},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Corbera, G.; Standish, C. D.; Katsamenis, O.; Titschack, J.; Rooij, D. V.; Foster, G. L.; Anagnostou, E.; Huvenne, V. A. I.; Ranero, C.; Gràcia, E.; Cacho, I.; Iacono, C. Lo
Temporal and spatial variability of Mediterranean cold-water coral mound development during the last 400 kyrs Proceedings Article
In: XXI INQUA Congress 2023, 2023.
@inproceedings{Corbera2023a,
title = {Temporal and spatial variability of Mediterranean cold-water coral mound development during the last 400 kyrs},
author = {G. Corbera and C. D. Standish and O. Katsamenis and J. Titschack and D. V. Rooij and G. L. Foster and E. Anagnostou and V. A. I. Huvenne and C. Ranero and E. Gràcia and I. Cacho and C. Lo Iacono},
year = {2023},
date = {2023-07-01},
booktitle = {XXI INQUA Congress 2023},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Corbera, G.; Standish, C. D.; Katsamenis, O.; Titschack, J.; Rooij, D. Van; Foster, G. L.; Anagnostou, E.; Huvenne, V. A. I.; Ranero, C.; Gràcia, E.; Cacho, I.; Iacono, C. Lo
Temporal and spatial variability of Mediterranean cold-water coral mound development during the last 400 kyrs Proceedings Article
In: XXI INQUA Congress, Rome, Italy, 2023.
@inproceedings{Corbera2023,
title = {Temporal and spatial variability of Mediterranean cold-water coral mound development during the last 400 kyrs},
author = {G. Corbera and C. D. Standish and O. Katsamenis and J. Titschack and D. Van Rooij and G. L. Foster and E. Anagnostou and V. A. I. Huvenne and C. Ranero and E. Gràcia and I. Cacho and C. Lo Iacono},
year = {2023},
date = {2023-07-01},
booktitle = {XXI INQUA Congress},
address = {Rome, Italy},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Landman, Malena Sabaté; Biguri, Ander; Hatamikia, Sepideh; Boardman, Richard; Aston, John; Schönlieb, Carola-Bibiane
On Krylov methods for large-scale CBCT reconstruction Journal Article
In: Physics in Medicine &$mathsemicolon$ Biology, vol. 68, no. 15, pp. 155008, 2023.
@article{Landman2023,
title = {On Krylov methods for large-scale CBCT reconstruction},
author = {Malena Sabaté Landman and Ander Biguri and Sepideh Hatamikia and Richard Boardman and John Aston and Carola-Bibiane Schönlieb},
doi = {10.1088/1361-6560/acd616},
year = {2023},
date = {2023-07-01},
journal = {Physics in Medicine &$mathsemicolon$ Biology},
volume = {68},
number = {15},
pages = {155008},
publisher = {IOP Publishing},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Katsamenis, O. L.; Goggin, P.; Michopoulou, S.; Duffin, N.; Simcock, I. C.; Hutchinson, J. C.; Arthurs, O. J.; Stocker, L. J.
Developing a UHS clinical service for investigating early pregnancy loss: Utilising μCT as a less invasive alternative to conventional autopsy Proceedings Article
In: 6th Annual Workshop on Advances in X-ray imaging, Harwell Science & Innovation Campus, Didcot, OX11 0QX, United Kingdom, 2023.
@inproceedings{Katsamenis2023b,
title = {Developing a UHS clinical service for investigating early pregnancy loss: Utilising μCT as a less invasive alternative to conventional autopsy},
author = {O. L. Katsamenis and P. Goggin and S. Michopoulou and N. Duffin and I. C. Simcock and J. C. Hutchinson and O. J. Arthurs and L. J. Stocker},
year = {2023},
date = {2023-06-01},
booktitle = {6th Annual Workshop on Advances in X-ray imaging},
address = {Harwell Science & Innovation Campus, Didcot, OX11 0QX, United Kingdom},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Trandafir, T. E.; Ho, E. M. L.; Lopuhaä, B. V.; Akram, F.; Lawson, M. J.; Wolf, J. L.; Konstantinopoulou, E.; Katsamenis, O. L.; Stubbs, A. P.; Li, Y.; Schneider, P.; Thüsen, J. H.
Thrombosis in SARS-CoV-2 Infected Lung Tissue; Artificial intelligence aided segmentation and 3D modelling of fatal thrombotic events Proceedings Article
In: 19th Congress on Digital Pathology (ECDP2023), Budapest, Hungary, 2023.
@inproceedings{Trandafir2023,
title = {Thrombosis in SARS-CoV-2 Infected Lung Tissue; Artificial intelligence aided segmentation and 3D modelling of fatal thrombotic events},
author = {T. E. Trandafir and E. M. L. Ho and B. V. Lopuhaä and F. Akram and M. J. Lawson and J. L. Wolf and E. Konstantinopoulou and O. L. Katsamenis and A. P. Stubbs and Y. Li and P. Schneider and J. H. Thüsen},
year = {2023},
date = {2023-06-01},
booktitle = {19th Congress on Digital Pathology (ECDP2023)},
address = {Budapest, Hungary},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Joyce, Rachael
Evaluating micron scale penetration not a skin substitute using micro-focus computed tomography and finite element analysis. Proceedings Article
In: 7th International Conference on Microneedles, 15 -17 May 2023, 2023.
@inproceedings{RachaelJoyce2023a,
title = {Evaluating micron scale penetration not a skin substitute using micro-focus computed tomography and finite element analysis.},
author = {Rachael Joyce},
url = {https://www.microneedlesconference.com/event/da40727d-f519-4d4e-9066-80680053ed10/summary},
year = {2023},
date = {2023-05-01},
booktitle = {7th International Conference on Microneedles, 15 -17 May 2023},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Scarth, C.; Chen, Y.; Aza, C.; Rhead, A. T.; Butler, R.
Manufacture of long spars: Laminate design, experimental trials and non-destructive evaluation Journal Article
In: Composites Part B: Engineering, vol. 255, pp. 110646, 2023, ISSN: 1359-8368.
@article{Scarth2023,
title = {Manufacture of long spars: Laminate design, experimental trials and non-destructive evaluation},
author = {C. Scarth and Y. Chen and C. Aza and A. T. Rhead and R. Butler},
url = {https://www.sciencedirect.com/science/article/pii/S135983682300149X},
doi = {10.1016/j.compositesb.2023.110646},
issn = {1359-8368},
year = {2023},
date = {2023-04-01},
journal = {Composites Part B: Engineering},
volume = {255},
pages = {110646},
publisher = {Elsevier BV},
abstract = {Although an enabler of high-rate manufacture, automated forming of components from flat laminates can result in fibre wrinkling. For the first time, fibre length is demonstrated to be a key driver of wrinkling defects when forming a C-spar with a central recess, at industrial length scales. Three such spars, of equal in-plane stiffness, were manufactured using Single Diaphragm Forming. Two contained standard ply angles (0°, 90° or ±45°) including 6 m long 0° fibres but had different stacking sequences, one shown to be formable in short spar trials, the other un-formable. A third spar also had a formable sequence but contained non-standard ply angles (angles other than 0°, 90° or ±45°) so that maximum fibre length was less than 0.6 m. Wrinkles occurred in both standard angle spars but did not occur in the non-standard angle case, demonstrating that use of formable, non-standard angle laminates can reduce scrappage of automatically formed aerospace parts, leading to significant time and cost savings in production.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Danzi, Federico; Campos, Pedro J. Silva; Arteiro, Albertino; Dalli, Denis; Furtado, Carolina; Chevalier, Jérémy; Tavares, Rodrigo P.; Lani, Frédéric; Camanho, Pedro P.
Longitudinal failure mechanisms and crack resistance curves of unidirectional thermoplastic composites Journal Article
In: Engineering Fracture Mechanics, vol. 282, pp. 109147, 2023.
@article{Danzi2023,
title = {Longitudinal failure mechanisms and crack resistance curves of unidirectional thermoplastic composites},
author = {Federico Danzi and Pedro J. Silva Campos and Albertino Arteiro and Denis Dalli and Carolina Furtado and Jérémy Chevalier and Rodrigo P. Tavares and Frédéric Lani and Pedro P. Camanho},
url = {https://www.sciencedirect.com/science/article/pii/S0013794423001054},
doi = {10.1016/j.engfracmech.2023.109147},
year = {2023},
date = {2023-04-01},
journal = {Engineering Fracture Mechanics},
volume = {282},
pages = {109147},
publisher = {Elsevier BV},
abstract = {This paper presents a study on the longitudinal fracture toughness, and associated crack resistance curves, of thermoplastic-based composite materials. Double-edge notched (DEN) specimens loaded in tension and compression are used to relate the size-effect laws with the crack resistance curves of unidirectional carbon-fibre reinforced PEKK. The results are corroborated with SEM and fractographic images to provide a better overview of the main failure mechanisms involved during the failure process. Moreover, tensile tests interrupted at 90% of the estimated failure load are CT-scanned to highlight the early stages of the crack propagation. This investigation confirms the suitability of the size-effect method for characterizing thermoplastic composites and it stands out as a first qualitative and quantitative analysis of their characteristic intra-laminar failure mechanisms.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Tolomeo, Mathias; McDowell, Glenn R.
DEM study of an “avatar” railway ballast with real particle shape, fabric and contact mechanics Journal Article
In: Granular Matter, vol. 25, no. 2, 2023.
@article{Tolomeo2023,
title = {DEM study of an “avatar” railway ballast with real particle shape, fabric and contact mechanics},
author = {Mathias Tolomeo and Glenn R. McDowell},
url = {https://link.springer.com/article/10.1007/s10035-023-01322-1},
doi = {10.1007/s10035-023-01322-1},
year = {2023},
date = {2023-03-01},
journal = {Granular Matter},
volume = {25},
number = {2},
publisher = {Springer Science and Business Media LLC},
abstract = {In this paper we show DEM simulations of static and cyclic large triaxial tests on a sample of railway ballast. The sample is reconstructed from X-Ray tomography images of an untested laboratory sample, recovered by impregnation with an epoxy resin. Measurements of both shape and fabric are carried out; the sample shows a high anisotropy of particle orientations due to the preparation procedure and a high shape heterogeneity. A DEM model is then generated using clumps to model single particles, preserving the shape of each particle and the fabric of the sample. Results of static and cyclic simulations are shown and compared with previous simulations on numerically generated samples, showing the importance of an accurate representation of the whole range of particle shapes, as well as confirming the effect of particle anisotropy on the mechanical response.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Conde-González, Antonio; Glinka, Michael; Dutta, Deepanjalee; Wallace, Robert; Callanan, Anthony; Oreffo, Richard O. C.; Bradley, Mark
Rapid fabrication and screening of tailored functional 3D biomaterials: Validation in bone tissue repair – Part II Journal Article
In: Biomaterials Advances, vol. 145, pp. 213250, 2023.
@article{CondeGonzalez2023,
title = {Rapid fabrication and screening of tailored functional 3D biomaterials: Validation in bone tissue repair – Part II},
author = {Antonio Conde-González and Michael Glinka and Deepanjalee Dutta and Robert Wallace and Anthony Callanan and Richard O. C. Oreffo and Mark Bradley},
doi = {10.1016/j.bioadv.2022.213250},
year = {2023},
date = {2023-02-01},
journal = {Biomaterials Advances},
volume = {145},
pages = {213250},
publisher = {Elsevier BV},
abstract = {Regenerative medicine strategies place increasingly sophisticated demands on 3D biomaterials to promote tissue formation at sites where tissue would otherwise not form. Ideally, the discovery/fabrication of the 3D scaffolds needs to be high-throughput and uniform to ensure quick and in-depth analysis in order to pinpoint appropriate chemical and mechanical properties of a biomaterial. Herein we present a versatile technique to screen new potential biocompatible acrylate-based 3D scaffolds with the ultimate aim of application in tissue repair. As part of this process, we identified an acrylate-based 3D porous scaffold that promoted cell proliferation followed by accelerated tissue formation, pre-requisites for tissue repair. Scaffolds were fabricated by a facile freeze-casting and an in-situ photo-polymerization route, embracing a high-throughput synthesis, screening and characterization protocol. The current studies demonstrate the dependence of cellular growth and vascularization on the porosity and intrinsic chemical nature of the scaffolds, with tuneable 3D scaffolds generated with large, interconnected pores suitable for cellular growth applied to skeletal reparation. Our studies showed increased cell proliferation, collagen and ALP expression, while chorioallantoic membrane assays indicated biocompatibility and demonstrated the angiogenic nature of the scaffolds. VEGRF2 expression in vivo observed throughout the 3D scaffolds in the absence of growth factor supplementation demonstrates a potential for angiogenesis. This novel platform provides an innovative approach to 3D scanning of synthetic biomaterials for tissue regeneration.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Kyrimis, Stylianos; Rankin, Kathryn E.; Potter, Matthew E.; Raja, Robert; Armstrong, Lindsay-Marie
Towards realistic characterisation of chemical reactors: An in-depth analysis of catalytic particle beds produced by sieving Journal Article
In: Advanced Powder Technology, vol. 34, no. 2, pp. 103932, 2023.
@article{Kyrimis2023,
title = {Towards realistic characterisation of chemical reactors: An in-depth analysis of catalytic particle beds produced by sieving},
author = {Stylianos Kyrimis and Kathryn E. Rankin and Matthew E. Potter and Robert Raja and Lindsay-Marie Armstrong},
url = {https://www.sciencedirect.com/science/article/pii/S0921883122005118},
doi = {https://doi.org/10.1016/j.apt.2022.103932},
year = {2023},
date = {2023-02-01},
journal = {Advanced Powder Technology},
volume = {34},
number = {2},
pages = {103932},
publisher = {Elsevier BV},
abstract = {Optimization of large-scale fixed particle bed catalytic reactors requires extensive insight into the multi-scale bed structure, even down to the micrometre scale. Theoretical studies of chemical reactors provide a time- and cost-effective means to supporting the optimisation process. However, they rely on simplified assumptions for the particles, e.g. homogeneous perfect spheres. In practise, the preparation of catalytic particles cannot attain this level of uniformity. Typical preparation techniques, such as sieving, are conducted with the aim of obtaining particle size distributions within a pre-defined range, governed by the sizes of the sieves. However, such methods offer limited control in the actual particle sizes and shapes. This paper evaluates the impact of sieving on the resulting particles and overall structural morphology of catalytic beds. The bed structure is quantified using micro-focus computed tomography (µ-CT), enabling the non-destructive examination and analysis of over 150 thousand particles, in terms of particle size, shape, uniformity, and interparticle porosity. Furthermore, the chemical performance of the resulting beds is compared. The detailed characterisation achieved paves the way for the evolution of more rigorous computational models coupling intricate, localised hydrodynamics with realistic chemical processes. Validation of such models at the lab-scale will accelerate the development of more accurate large-scale models.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Smith, Ronan; Boardman, Richard; Thibault, Pierre
Speckle-based directional dark-field x-ray imaging with a liquid-metal-jet source Proceedings Article
In: PROCEEDINGS OF THE 15TH INTERNATIONAL CONFERENCE ON X-RAY MICROSCOPY – XRM2022, AIP Publishing, 2023.
@inproceedings{Smith2023,
title = {Speckle-based directional dark-field x-ray imaging with a liquid-metal-jet source},
author = {Ronan Smith and Richard Boardman and Pierre Thibault},
doi = {10.1063/5.0168156},
year = {2023},
date = {2023-01-01},
booktitle = {PROCEEDINGS OF THE 15TH INTERNATIONAL CONFERENCE ON X-RAY MICROSCOPY – XRM2022},
publisher = {AIP Publishing},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Serrano, Steven; Patel, Palak B.; Li, Carina X.; Dai, Jingyao; Rogers, Marianna; Gonzalez, Erick; Furtado, Carolina; Lee, Yeajin; Campos, Pedro; Rankin, Katy; Basford, Philip; Uesugi, Masayuki; Takeuchi, Akihisa; Camanho, Pedro; Mavrog, Mark
Synchrotron Radiation 3D Computed Tomography of In Situ Mode I Testing of Carbon Fiber Composites with Carbon Nanotube Interlaminar Reinforcement Proceedings Article
In: Proceedings of the Twenty-Third International Conference on Composite Materials (ICCM23), Belfast, 2023.
@inproceedings{serrano2023synchrotron,
title = {Synchrotron Radiation 3D Computed Tomography of In Situ Mode I Testing of Carbon Fiber Composites with Carbon Nanotube Interlaminar Reinforcement},
author = {Steven Serrano and Palak B. Patel and Carina X. Li and Jingyao Dai and Marianna Rogers and Erick Gonzalez and Carolina Furtado and Yeajin Lee and Pedro Campos and Katy Rankin and Philip Basford and Masayuki Uesugi and Akihisa Takeuchi and Pedro Camanho and Mark Mavrog},
url = {https://www.iccm-central.org/Proceedings/ICCM23proceedings/papers/ICCM23_Full_Paper_219.pdf},
year = {2023},
date = {2023-01-01},
booktitle = {Proceedings of the Twenty-Third International Conference on Composite Materials (ICCM23)},
address = {Belfast},
abstract = {Lightweight heterogeneous materials such as unidirectional (UD) carbon fiber reinforced polymers (CFRP) are advantageous due to their tailorable, lightweight, and multi-directional capabilities, making them a strong candidate for aerospace applications. However, in prepreg-based laminate manufacturing, the resin-rich interlaminar (IL) regions of composite laminates are prone to failure. To overcome these shortcomings, various methods to reinforce the IL region have been studied. In this study, vertically aligned carbon nanotubes (VACNTs) were used to provide interlaminar reinforcement to CFRP
specimens in a configuration known as "nanostitch." The purpose was to analyze the crack bifurcation phenomenon observed in previous studies, where the crack propagated away from the interlaminar region into the intralaminar region. Nanostitched and baseline specimens were tested via in situ synchrotron radiation computed tomography (SRCT) to study the behavior of the crack propagation in Mode I specimens, and ex situ Mode I testing was conducted to ensure characteristic behavior. SRCT images taken across the width of the Mode I specimens showed the crack propagating into the intralaminar region across the width of the specimen, consistent with previous work and demonstrating an IL fracture toughness superior to that of the baseline specimen. Ex situ Mode I testing showed crack bifurcation but no change in calculated Mode I fracture toughness between baseline and nanostitched specimens, consistent with prior work and indicating that the intralaminar Mode I toughness is similar in magnitude to the IL baseline fracture toughness.},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
specimens in a configuration known as "nanostitch." The purpose was to analyze the crack bifurcation phenomenon observed in previous studies, where the crack propagated away from the interlaminar region into the intralaminar region. Nanostitched and baseline specimens were tested via in situ synchrotron radiation computed tomography (SRCT) to study the behavior of the crack propagation in Mode I specimens, and ex situ Mode I testing was conducted to ensure characteristic behavior. SRCT images taken across the width of the Mode I specimens showed the crack propagating into the intralaminar region across the width of the specimen, consistent with previous work and demonstrating an IL fracture toughness superior to that of the baseline specimen. Ex situ Mode I testing showed crack bifurcation but no change in calculated Mode I fracture toughness between baseline and nanostitched specimens, consistent with prior work and indicating that the intralaminar Mode I toughness is similar in magnitude to the IL baseline fracture toughness.
Clark, Molly; Garg, Tushar; Rankin, Kathryn E; Bradshaw, Darren; Nightingale, Adrian Matthew
3D printed filtration and separation devices with integrated membranes and no post-printing assembly Journal Article
In: Reaction Chemistry &$mathsemicolon$ Engineering, 2023.
@article{Clark2023,
title = {3D printed filtration and separation devices with integrated membranes and no post-printing assembly},
author = {Molly Clark and Tushar Garg and Kathryn E Rankin and Darren Bradshaw and Adrian Matthew Nightingale},
url = {https://pubs.rsc.org/en/content/articlepdf/2023/re/d3re00245d},
doi = {10.1039/d3re00245d},
year = {2023},
date = {2023-01-01},
journal = {Reaction Chemistry &$mathsemicolon$ Engineering},
publisher = {Royal Society of Chemistry (RSC)},
abstract = {Additive manufacturing, or three-dimensional (3D) printing, is an accessible, quick, and user-friendly tool for fabricating reactors and chemical processing devices. Here we report a method for printing filtration and separation devices using fused-deposition modelling (FDM) which incorporate commercial porous membranes. By using exogenous membranes, membrane pore size and material can be arbitrarily specified allowing much greater versatility in device design. We show for the first time that fully operational monolithic devices can be created without need for post-printing assembly and demonstrate the efficacy of the approach by making and testing three distinct devices: dead-end filters, which can be made in a range of sizes and are shown to fully remove micron-sized particles from a heterogenous mixture; liquid–liquid separators, which are shown to completely separate segmented flows of immiscible liquids; and a cross-flow filtration device, which is shown to achieve near full dye removal from an aqueous stream with a residence time of 3.4 minutes. For the cross-flow filtration device we describe a new “double-sided” printing technique whereby the plastic is directly printed onto both sides of the membrane to ensure the membrane is fully bonded to the 3D printed body. The range of devices showcased here highlights the versatility of the approach and its potential for use in chemical processing applications that require porous membranes.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Williams, Katherine Anne
University of Southampton, 2023.
@phdthesis{williams2023bone,
title = {The bone microstructure of living and fossil birds: high-resolution 3D imaging for enhanced avian palaeobiology},
author = {Katherine Anne Williams},
url = {https://eprints.soton.ac.uk/473893/1/Katherine_Williams_Thesis_unlocked.pdf},
year = {2023},
date = {2023-01-01},
school = {University of Southampton},
abstract = {Accurately estimating developmental age and life history traits in fossils is crucial for identifying
and classifying extinct species and understanding how biological attributes evolved. The
evolution of life history traits such as growth pattern is far from clear in birds, and development
has been studied in only a handful of modern species. The exceptionally rapid growth of
modern birds means ageing methods based on annual incremental growth lines, used in other
vertebrates, are inapplicable to birds and robust alternative methods remain to be established.
Analysis of avian intracortical bone microstructure, which varies both with age and tissue
deposition rate, is a promising approach already used in palaeobiology. However, current thin
section-based histological methods are destructive. Moreover, to date, most microstructural
studies in avian bone are qualitative, 2D, and involve a limited range of extant species. The
objective of this study was to investigate cortical bone microstructure and developmental age
and life history traits in living birds, to identify phenotypes which can then be applied to
examination of the fossil record, using minimally-destructive high-resolution 3D imaging.
First, the necessity of 3D measurement was tested: a combination of idealised, simulated
datasets and real synchrotron-based computed tomography (SR CT) datasets were used to
compare published methods for measuring key microstructural traits based on 2D sections and
3D volumes. Next, SR CT imaging and quantitative measurements were used to characterise
age-related changes in bone microstructure in a range of extant bird species: growth series
ducks and pheasants, and a smaller sample size in starlings, rock doves, partridges, and ostrich.
The methods tested in modern material were applied to fossils as a proof-of concept.
It was found that 3D quantification methods are required for measuring vascular canal
orientation and osteocyte lacunar shape and volume, though 2D sections could be used to
measure traits such as bone volume fraction (BV/TV) and osteocyte lacunar volume. In all
species studied, juvenile, subadult, and adult species could be distinguished by their values of
BV/TV, and further information could be added using measured values of vascular canal
diameter as well as qualitative assessment. Using a synchrotron-based CT system,
high-resolution 3D datasets comparable to modern bone samples were obtained from fossils,
and preliminary estimates of developmental age can be made.
Further work may reveal more changes within juvenile age stages, and better characterise the
variation within extant birds, allowing more accurate interpretation of the fossil record.
Therefore developmental studies in a greater number of extant bird species are required using
larger sample sizes, to support and add to the results presented in this thesis.},
keywords = {},
pubstate = {published},
tppubtype = {phdthesis}
}
and classifying extinct species and understanding how biological attributes evolved. The
evolution of life history traits such as growth pattern is far from clear in birds, and development
has been studied in only a handful of modern species. The exceptionally rapid growth of
modern birds means ageing methods based on annual incremental growth lines, used in other
vertebrates, are inapplicable to birds and robust alternative methods remain to be established.
Analysis of avian intracortical bone microstructure, which varies both with age and tissue
deposition rate, is a promising approach already used in palaeobiology. However, current thin
section-based histological methods are destructive. Moreover, to date, most microstructural
studies in avian bone are qualitative, 2D, and involve a limited range of extant species. The
objective of this study was to investigate cortical bone microstructure and developmental age
and life history traits in living birds, to identify phenotypes which can then be applied to
examination of the fossil record, using minimally-destructive high-resolution 3D imaging.
First, the necessity of 3D measurement was tested: a combination of idealised, simulated
datasets and real synchrotron-based computed tomography (SR CT) datasets were used to
compare published methods for measuring key microstructural traits based on 2D sections and
3D volumes. Next, SR CT imaging and quantitative measurements were used to characterise
age-related changes in bone microstructure in a range of extant bird species: growth series
ducks and pheasants, and a smaller sample size in starlings, rock doves, partridges, and ostrich.
The methods tested in modern material were applied to fossils as a proof-of concept.
It was found that 3D quantification methods are required for measuring vascular canal
orientation and osteocyte lacunar shape and volume, though 2D sections could be used to
measure traits such as bone volume fraction (BV/TV) and osteocyte lacunar volume. In all
species studied, juvenile, subadult, and adult species could be distinguished by their values of
BV/TV, and further information could be added using measured values of vascular canal
diameter as well as qualitative assessment. Using a synchrotron-based CT system,
high-resolution 3D datasets comparable to modern bone samples were obtained from fossils,
and preliminary estimates of developmental age can be made.
Further work may reveal more changes within juvenile age stages, and better characterise the
variation within extant birds, allowing more accurate interpretation of the fossil record.
Therefore developmental studies in a greater number of extant bird species are required using
larger sample sizes, to support and add to the results presented in this thesis.
Katsamenis, Orestis L.; Tabriz, Atabak Ghanizadeh; Gonot-Munck, Quentin; Baudoux, Arnaud; Garg, Vivek; Farnish, Richard; Hui, Ho-Wah; Boersen, Nathan; Roberts, Sandra; Jones, John; Douroumis, Dennis
3D Printing of Personalised Carvedilol Tablets Using Selective Laser Sintering - Underlying Data Miscellaneous
2023.
@misc{Katsamenis2023d,
title = {3D Printing of Personalised Carvedilol Tablets Using Selective Laser Sintering - Underlying Data},
author = {Orestis L. Katsamenis and Atabak Ghanizadeh Tabriz and Quentin Gonot-Munck and Arnaud Baudoux and Vivek Garg and Richard Farnish and Ho-Wah Hui and Nathan Boersen and Sandra Roberts and John Jones and Dennis Douroumis},
doi = {10.5281/ZENODO.8284414},
year = {2023},
date = {2023-01-01},
publisher = {Zenodo},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Katsamenis, Orestis L.; Basford, Philip J.; Robinson, Stephanie K.; Boardman, Richard P.; Konstantinopoulou, Elena; Lackie, Peter M.; Page, Anton; Ratnayaka, J. Arjuna; Goggin, Patricia M.; Thomas, Gareth J.; Cox, Simon J.; Sinclair, Ian; Schneider, Philipp
A high-throughput 3D X-ray histology facility for biomedical research and preclinical applications - Supplementary Data Miscellaneous
2023.
@misc{Katsamenis2023,
title = {A high-throughput 3D X-ray histology facility for biomedical research and preclinical applications - Supplementary Data},
author = {Orestis L. Katsamenis and Philip J. Basford and Stephanie K. Robinson and Richard P. Boardman and Elena Konstantinopoulou and Peter M. Lackie and Anton Page and J. Arjuna Ratnayaka and Patricia M. Goggin and Gareth J. Thomas and Simon J. Cox and Ian Sinclair and Philipp Schneider},
doi = {10.5281/ZENODO.8082803},
year = {2023},
date = {2023-01-01},
publisher = {Zenodo},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Katsamenis, Orestis L.; Basford, Philip J.; Robinson, Stephanie K.; Boardman, Richard P.; Konstantinopoulou, Elena; Lackie, Peter M.; Page, Anton; Ratnayaka, J. Arjuna; Goggin, Patricia M.; Thomas, Gareth J.; Cox, Simon J.; Sinclair, Ian; Schneider, Philipp
A high-throughput 3D X-ray histology facility for biomedical research and preclinical applications - Underlying Data Miscellaneous
2023.
@misc{Katsamenis2023a,
title = {A high-throughput 3D X-ray histology facility for biomedical research and preclinical applications - Underlying Data},
author = {Orestis L. Katsamenis and Philip J. Basford and Stephanie K. Robinson and Richard P. Boardman and Elena Konstantinopoulou and Peter M. Lackie and Anton Page and J. Arjuna Ratnayaka and Patricia M. Goggin and Gareth J. Thomas and Simon J. Cox and Ian Sinclair and Philipp Schneider},
doi = {10.5281/ZENODO.8083459},
year = {2023},
date = {2023-01-01},
publisher = {Zenodo},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
Basford, Philip J.; Katsamenis, Orestis L.; Robinson, Stephanie K.; Boardman, Richard P.; Konstantinopoulou, Elena; Lackie, Peter M.; Page, Anton; Ratnayaka, J. Arjuna; Goggin, Patricia M.; Thomas, Gareth J.; Sinclair, Ian; Schneider, Philipp; Cox, Simon J.
muvis-tomography/xrhms: v1.0.0 Miscellaneous
2023.
@misc{Basford2023,
title = {muvis-tomography/xrhms: v1.0.0},
author = {Philip J. Basford and Orestis L. Katsamenis and Stephanie K. Robinson and Richard P. Boardman and Elena Konstantinopoulou and Peter M. Lackie and Anton Page and J. Arjuna Ratnayaka and Patricia M. Goggin and Gareth J. Thomas and Ian Sinclair and Philipp Schneider and Simon J. Cox},
doi = {10.5281/ZENODO.8178308},
year = {2023},
date = {2023-01-01},
publisher = {Zenodo},
abstract = {This is the underlying code for the xrhms written as part of the X-ray Histology Project https://www.xrayhistology.org/ funded by the Wellcome Trust (grant 212940/Z/18/Z and WT109682MA) and the University of Southampton. The X-ray Histology facility is located at the University Hospital Southampton and sits within the University of Southampton µ-VIS X-ray Imaging Centre https://muvis.org and the Biomedical Imaging Unit https://www.southampton.ac.uk/biu/. Please note that this version of the code has had some third-party confidential IP supplied to us under NDA by hardware manufacturers removed from it. While efforts have been made to minimize the impact on the main functionality of the code, we strongly recommend users to perform their own thorough bug-check and edits before attempting to run the code. This will help ensure that any potential issues related to the removal of the confidential IP are addressed. XRHMS is built using Python 3 and uses the django web framework https://www.djangoproject.com/.},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}